BioPerl Project
Description
BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role in the Human Genome Project. Written in: Perl License: Artistic License and GPL
BioPerl Project List of Employees There's an exhaustive list of past and present employees! Get comprehensive information on the number of employees at BioPerl Project. You can filter them based on skills, years of employment, job, education, department, and prior employment.
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11 BioPerl Project employees in database. Find out everything there's to know about BioPerl Project employees. We offer you a great deal of unbiased information from the internal database, personal records, and many other details that might be of interest to you.
BioPerl Project Employees
Employee
Years
Job
Industry
Dave Messina Dave Messina's BioPerl Project Experience May 2010 - Present
Job Chief Operating Officer at Cofactor Genomics — The Leaders in RNA
Industry Biotechnology
Experience
Cofactor Genomics April 2015 - Present
Thomas Jefferson School September 2013 - Present
Cold Spring Harbor Laboratory October 2006 - Present
St. Louis BMW Club January 2015 - Present
BioPerl Project May 2010 - Present
Cofactor Genomics March 2012 - April 2015
Stockholm University August 2007 - March 2012
BioPerl Project June 2005 - May 2010
Washington University Genome Sequencing Center September 2004 - July 2007
Washington University School of Medicine September 1998 - January 2004
Skills
Bioinformatics, Genomics, Sequence Analysis, Microarray Analysis, Metagenomics, Human Genetics, Computational Biology, BioPerl, Biology, Genetics, Sequencing, Molecular Biology, Perl, Population Genetics, Microarray, Informatics, Comparative Genomics, R, DNA sequencing, Lifesciences, Science, Proteomics, Molecular Evolution, Transcriptomics, Functional Genomics, DNA, Experimental Design, Molecular Genetics, Gene Expression..., RNAseq, DNA Sequencing, Life Sciences
Education
Stockholms universitet 2007 — 2012
Doctor of Philosophy (Ph.D.), Computational Biology
Washington University School of Medicine in St. Louis 1998 — 2004
MS, Genetics
University of Illinois at Chicago 1994 — 1996
BA, Biology
Cofactor Genomics April 2015 - Present
Thomas Jefferson School September 2013 - Present
Cold Spring Harbor Laboratory October 2006 - Present
St. Louis BMW Club January 2015 - Present
BioPerl Project May 2010 - Present
Cofactor Genomics March 2012 - April 2015
Stockholm University August 2007 - March 2012
BioPerl Project June 2005 - May 2010
Washington University Genome Sequencing Center September 2004 - July 2007
Washington University School of Medicine September 1998 - January 2004
Skills
Bioinformatics, Genomics, Sequence Analysis, Microarray Analysis, Metagenomics, Human Genetics, Computational Biology, BioPerl, Biology, Genetics, Sequencing, Molecular Biology, Perl, Population Genetics, Microarray, Informatics, Comparative Genomics, R, DNA sequencing, Lifesciences, Science, Proteomics, Molecular Evolution, Transcriptomics, Functional Genomics, DNA, Experimental Design, Molecular Genetics, Gene Expression..., RNAseq, DNA Sequencing, Life Sciences
Education
Stockholms universitet 2007 — 2012
Doctor of Philosophy (Ph.D.), Computational Biology
Washington University School of Medicine in St. Louis 1998 — 2004
MS, Genetics
University of Illinois at Chicago 1994 — 1996
BA, Biology
Robert Buels Robert Buels's BioPerl Project Experience May 2010 - September 2011
Job Software Developer, Knowledge Informatics at Foundation Medicine
Industry Biotechnology
Experience
Foundation Medicine March 2014 - Present
CPAN June 2009 - Present
Generic Model Organism Database Project (GMOD) January 2006 - Present
UC Berkeley January 2012 - March 2014
Boyce Thompson Institute for Plant Research 2004 - January 2012
BioPerl Project May 2010 - September 2011
Serious Bread April 2007 - January 2009
Skills
Perl, Python, Catalyst, Mod_perl, Apache, Nginx, JavaScript, PostgreSQL, Bioinformatics, Genomics, Comparative Genomics, Data Visualization, Computer Vision, Entrepreneurial..., R, Git, Linux, Programming, High Performance..., Web Applications, Open Source, Java, Computer Science, Data Mining, Databases, Ruby, XML, MySQL, Bash, Software Development, HTML, Unix, System Architecture, Semantic Web, Algorithms, Software Engineering, Shell Scripting, Machine Learning, Ubuntu, Entrepreneurship
Education
Cornell University 2003 — 2004
M. Eng., Electrical and Computer Engineering, 3.5
Cornell University 1999 — 2003
B.S., Electrical and Computer Engineering, 3.8, magna cum laude
Foundation Medicine March 2014 - Present
CPAN June 2009 - Present
Generic Model Organism Database Project (GMOD) January 2006 - Present
UC Berkeley January 2012 - March 2014
Boyce Thompson Institute for Plant Research 2004 - January 2012
BioPerl Project May 2010 - September 2011
Serious Bread April 2007 - January 2009
Skills
Perl, Python, Catalyst, Mod_perl, Apache, Nginx, JavaScript, PostgreSQL, Bioinformatics, Genomics, Comparative Genomics, Data Visualization, Computer Vision, Entrepreneurial..., R, Git, Linux, Programming, High Performance..., Web Applications, Open Source, Java, Computer Science, Data Mining, Databases, Ruby, XML, MySQL, Bash, Software Development, HTML, Unix, System Architecture, Semantic Web, Algorithms, Software Engineering, Shell Scripting, Machine Learning, Ubuntu, Entrepreneurship
Education
Cornell University 2003 — 2004
M. Eng., Electrical and Computer Engineering, 3.5
Cornell University 1999 — 2003
B.S., Electrical and Computer Engineering, 3.8, magna cum laude
Hilmar Lapp's BioPerl Project Experience 1999 - Present
Job Director of Informatics
Industry Biotechnology
Experience
Center for Genomic and Computational Biology (GCB), Duke University June 2014 - Present
Open Bioinformatics Foundation (OBF) December 2011 - Present
NESCent May 2006 - Present
Open Bioinformatics Foundation (OBF) 2001 - Present
BioPerl Project 1999 - Present
Genomics Institute of the Novartis Research Foundation (GNF) September 2001 - April 2006
Novartis Research Institute Vienna, Austria May 1997 - July 2001
Skills
Perl, C, Algorithms, PostgreSQL, MySQL, PL/SQL, Design Patterns, Data Modeling, Bioinformatics, Databases, Java, XML, SQL, Database Development, Database Design, Programming, Genomics, Web Services, Software Development, Unix, R, Computational Biology, Agile, Data Mining, Software Engineering, Web Applications, Mac OS X, Subversion, C++, Data Analysis, Sequence Analysis, Computer Science, Linux, Lifesciences, Informatics, Mentoring, Relational Databases, Machine Learning, Shell Scripting, BioPerl, Ontologies, Software Design, Science, Semantic Web, Git, Molecular Biology, Life Sciences
Education
The University of Freiburg 1988 — 1997
Dipl. Biol. (M.Sc.), Plant Physiology, Cell Biology, Biochemistry, Computer Science
Ludwig-Maximilians Universität München 1985 — 1987
Undergraduate (Pre-Diploma), Biology
Center for Genomic and Computational Biology (GCB), Duke University June 2014 - Present
Open Bioinformatics Foundation (OBF) December 2011 - Present
NESCent May 2006 - Present
Open Bioinformatics Foundation (OBF) 2001 - Present
BioPerl Project 1999 - Present
Genomics Institute of the Novartis Research Foundation (GNF) September 2001 - April 2006
Novartis Research Institute Vienna, Austria May 1997 - July 2001
Skills
Perl, C, Algorithms, PostgreSQL, MySQL, PL/SQL, Design Patterns, Data Modeling, Bioinformatics, Databases, Java, XML, SQL, Database Development, Database Design, Programming, Genomics, Web Services, Software Development, Unix, R, Computational Biology, Agile, Data Mining, Software Engineering, Web Applications, Mac OS X, Subversion, C++, Data Analysis, Sequence Analysis, Computer Science, Linux, Lifesciences, Informatics, Mentoring, Relational Databases, Machine Learning, Shell Scripting, BioPerl, Ontologies, Software Design, Science, Semantic Web, Git, Molecular Biology, Life Sciences
Education
The University of Freiburg 1988 — 1997
Dipl. Biol. (M.Sc.), Plant Physiology, Cell Biology, Biochemistry, Computer Science
Ludwig-Maximilians Universität München 1985 — 1987
Undergraduate (Pre-Diploma), Biology
George Hartzell George Hartzell's BioPerl Project Experience 2005 - Present
Job Principal Computational Biologist at Genentech
Industry Biotechnology
Experience
BioPerl Project 2005 - Present
Genentech February 2009 - January 2012
Atlantes Services, Inc 2000 - 2001
WebTV Networks 1996 - 1999
Stanford University School of Medicine 1992 - 1993
Education
Swarthmore College
BioPerl Project 2005 - Present
Genentech February 2009 - January 2012
Atlantes Services, Inc 2000 - 2001
WebTV Networks 1996 - 1999
Stanford University School of Medicine 1992 - 1993
Education
Swarthmore College
Scott Cain Scott Cain's BioPerl Project Experience January 2003 - Present
Job Bioinformatics Software Manager at Ontario Institute for Cancer Research
Industry Biotechnology
Experience
Ontario Institute for Cancer Research October 2008 - Present
Bioperl Project January 2003 - Present
University of Phoenix November 2002 - Present
Cold Spring Harbor Laboratory September 2002 - October 2008
Athersys 1999 - 2002
DoubleTwist 1998 - 1999
Skills
Perl, XML, MySQL, Lifesciences, Bioinformatics, Molecular Biology, Java, Genetics, Apache, PostgreSQL, Computational Biology, Science, Databases, Web Development, Genomics, Unix, Life Sciences, Biochemistry, Linux, Database Design
Education
University of California, San Diego 1990 — 1997
PhD, Biochemical Engineering
The Ohio State University 1986 — 1990
BS, Chemical Engineering
Ontario Institute for Cancer Research October 2008 - Present
Bioperl Project January 2003 - Present
University of Phoenix November 2002 - Present
Cold Spring Harbor Laboratory September 2002 - October 2008
Athersys 1999 - 2002
DoubleTwist 1998 - 1999
Skills
Perl, XML, MySQL, Lifesciences, Bioinformatics, Molecular Biology, Java, Genetics, Apache, PostgreSQL, Computational Biology, Science, Databases, Web Development, Genomics, Unix, Life Sciences, Biochemistry, Linux, Database Design
Education
University of California, San Diego 1990 — 1997
PhD, Biochemical Engineering
The Ohio State University 1986 — 1990
BS, Chemical Engineering
Mauricio Herrera Cuadra Mauricio Herrera Cuadra's BioPerl Project Experience 2005 - 2012
Job Software Developer and Open Source Bioinformatician
Industry Computer Software
Experience
The North Face August 2014 - Present
FreeBSD Project 2005 - Present
PepPod July 2014 - January 2015
Synacor Inc. 2013 - 2014
Synacor Inc. 2010 - 2013
Open Bioinformatics Foundation 2006 - 2012
BioPerl Project 2005 - 2012
Yahoo! Inc. 2007 - 2009
Facultad de Estudios Superiores Iztacala, UNAM 1999 - 2008
Yahoo! Inc. 2006 - 2007
Skills
Perl, PHP, MySQL, Linux, Bash, Software Development, Apache, Shell Scripting, Bioinformatics, Programming, Python, PostgreSQL, XML, JavaScript, Subversion, Git, Unix, HTML, CVS, User Experience, CSS, Bugzilla, Dreamweaver, Photoshop, Microsoft Office, Scalability, Genetics, Genomics, Windows, GNU Make, TCP/IP, Samba, Flash, Illustrator, REST, Software Engineering, GIMP, Microbial Ecology, Microbiology, Bioinformatics Tools, Biological Databases, PL/pgSQL, PL/Proxy, Perl/DBI, Apache/SSL, Adobe Acrobat, Fireworks, OpenOffice.org, JIRA
Education
Instituto Tecnológico y de Estudios Superiores de Monterrey 2010 — 2010
Instituto de Investigaciones en Matemáticas Aplicadas y Sistemas, UNAM 2005 — 2005
Simposio Internacional Bioinformática: Genómica y Proteómica 2004 — 2004
Facultad de Estudios Superiores Iztacala, UNAM 1998 — 2002
Bachelor of Science in Biology
The North Face August 2014 - Present
FreeBSD Project 2005 - Present
PepPod July 2014 - January 2015
Synacor Inc. 2013 - 2014
Synacor Inc. 2010 - 2013
Open Bioinformatics Foundation 2006 - 2012
BioPerl Project 2005 - 2012
Yahoo! Inc. 2007 - 2009
Facultad de Estudios Superiores Iztacala, UNAM 1999 - 2008
Yahoo! Inc. 2006 - 2007
Skills
Perl, PHP, MySQL, Linux, Bash, Software Development, Apache, Shell Scripting, Bioinformatics, Programming, Python, PostgreSQL, XML, JavaScript, Subversion, Git, Unix, HTML, CVS, User Experience, CSS, Bugzilla, Dreamweaver, Photoshop, Microsoft Office, Scalability, Genetics, Genomics, Windows, GNU Make, TCP/IP, Samba, Flash, Illustrator, REST, Software Engineering, GIMP, Microbial Ecology, Microbiology, Bioinformatics Tools, Biological Databases, PL/pgSQL, PL/Proxy, Perl/DBI, Apache/SSL, Adobe Acrobat, Fireworks, OpenOffice.org, JIRA
Education
Instituto Tecnológico y de Estudios Superiores de Monterrey 2010 — 2010
Instituto de Investigaciones en Matemáticas Aplicadas y Sistemas, UNAM 2005 — 2005
Simposio Internacional Bioinformática: Genómica y Proteómica 2004 — 2004
Facultad de Estudios Superiores Iztacala, UNAM 1998 — 2002
Bachelor of Science in Biology
Jun Yin Jun Yin's BioPerl Project Experience June 2010 - August 2010
Job Postdoc Associate at Yale University, Bioinformatics and Systems Biology
Industry Biotechnology
Experience
Yale University March 2012 - Present
University College Dublin 2008 - 2012
EBI January 2011 - April 2011
BioPerl Project June 2010 - August 2010
CapitalBio September 2006 - December 2007
Uppsala University 2005 - 2006
Nankai University January 2004 - June 2004
Skills
Bioinformatics, Microarray Analysis, R, Perl, ChIP-seq, Cancer Genomics, Developmental Biology, RNA-seq, Data Mining, Network Analysis
Education
University College Dublin 2008 — 2011
Ph.D., Bioinformatics and Systems Biology
Uppsala University 2005 — 2006
M.Sc., Molecular Cell Biology
Nankai University 2000 — 2004
B.Sc., Biological science
Yale University March 2012 - Present
University College Dublin 2008 - 2012
EBI January 2011 - April 2011
BioPerl Project June 2010 - August 2010
CapitalBio September 2006 - December 2007
Uppsala University 2005 - 2006
Nankai University January 2004 - June 2004
Skills
Bioinformatics, Microarray Analysis, R, Perl, ChIP-seq, Cancer Genomics, Developmental Biology, RNA-seq, Data Mining, Network Analysis
Education
University College Dublin 2008 — 2011
Ph.D., Bioinformatics and Systems Biology
Uppsala University 2005 — 2006
M.Sc., Molecular Cell Biology
Nankai University 2000 — 2004
B.Sc., Biological science
Scott Markel's BioPerl Project Experience 1998 - Present
Job BIOVIA Director, Life Sciences Modeling and Informatics at Dassault Systèmes
Industry Computer Software
Experience
Dassault Systèmes May 2015 - Present
ISCB - International Society for Computational Biology January 2011 - Present
ISCB - International Society for Computational Biology January 2006 - Present
BioPerl Project 1998 - Present
Dassault Systèmes May 2014 - May 2015
Accelrys September 2004 - May 2014
ISCB - International Society for Computational Biology January 2009 - January 2011
SciTegic February 2004 - September 2004
LION bioscience January 2002 - February 2004
NetGenics Inc April 1998 - February 2002
Skills
Bioinformatics, Computational Biology, Lifesciences, Science, Programming, BioPerl, Sequence Analysis, DNA sequencing, Genomics, R&D, Biotechnology, Databases, Life Sciences, Negotiation, R, Data Mining, Molecular Biology, Genetics, Drug Discovery, Informatics, Machine Learning, Biochemistry, Perl, High Performance..., Data Analysis, Algorithms, Python, Sequencing, Mathematical Modeling, Data Management, Start-ups, Cell Biology, Statistics, Next Gen Sequencing, Software Design, Product Management, Product Development
Education
University of Wisconsin-Madison 1981 — 1987
Ph.D., Mathematics
University of Wisconsin-Madison 1981 — 1984
M.A., Mathematics
University of Minnesota-Twin Cities 1977 — 1981
B.A., Mathematics
Dassault Systèmes May 2015 - Present
ISCB - International Society for Computational Biology January 2011 - Present
ISCB - International Society for Computational Biology January 2006 - Present
BioPerl Project 1998 - Present
Dassault Systèmes May 2014 - May 2015
Accelrys September 2004 - May 2014
ISCB - International Society for Computational Biology January 2009 - January 2011
SciTegic February 2004 - September 2004
LION bioscience January 2002 - February 2004
NetGenics Inc April 1998 - February 2002
Skills
Bioinformatics, Computational Biology, Lifesciences, Science, Programming, BioPerl, Sequence Analysis, DNA sequencing, Genomics, R&D, Biotechnology, Databases, Life Sciences, Negotiation, R, Data Mining, Molecular Biology, Genetics, Drug Discovery, Informatics, Machine Learning, Biochemistry, Perl, High Performance..., Data Analysis, Algorithms, Python, Sequencing, Mathematical Modeling, Data Management, Start-ups, Cell Biology, Statistics, Next Gen Sequencing, Software Design, Product Management, Product Development
Education
University of Wisconsin-Madison 1981 — 1987
Ph.D., Mathematics
University of Wisconsin-Madison 1981 — 1984
M.A., Mathematics
University of Minnesota-Twin Cities 1977 — 1981
B.A., Mathematics
Mark Jensen's BioPerl Project Experience July 2009 - Present
Job Director, Genomic Data Programs at Leidos BioMed
Industry Research
Experience
Leidos Health October 2014 - Present
The Perl Foundation August 2014 - Present
BioPerl Project July 2009 - Present
Fortinbras Research May 2008 - Present
SRA International January 2014 - October 2014
SRA International April 2011 - January 2014
Journal of Molecular Evolution February 2008 - January 2013
British Columbia Centre for Excellence in HIV/AIDS June 2008 - May 2011
SRA International May 2010 - April 2011
SRA International July 2009 - May 2010
Skills
Bioinformatics, Genomics, Perl, Computational Biology, R, Cancer Research, BioPerl, Genetics, Data Analysis, Population Genetics, XML, Scientific Writing, Sequence Analysis, Managerial Experience, Data Management, Science Communication, Software Design, Molecular Evolution, Microbiology, Government Contracting, Agile Project Management, Mathematical Modeling, Science, Database Design, Training & Development, Molecular Epidemology, Databases, Management, Open Source Software, JIRA, XSD, Laboratory, Employee Training, Informatics, Federal Agencies, Software Implementation, Neo4j, Evolutionary Biology, Editing, Peer Review, Unix Shell Scripting, Confluence, Wikis, Laboratory Experience, Writing, Writing For Publication, HIV/AIDS
Education
The University of Chicago 1994 — 2000
PhD, Molecular Evolution
University of Vienna 1990 — 1991
Fulbright Scholar, Mathematics
Heriot-Watt University 1988 — 1989
MSc, Mathematics
Washington State University 1983 — 1987
B.S., Mathematics
Leidos Health October 2014 - Present
The Perl Foundation August 2014 - Present
BioPerl Project July 2009 - Present
Fortinbras Research May 2008 - Present
SRA International January 2014 - October 2014
SRA International April 2011 - January 2014
Journal of Molecular Evolution February 2008 - January 2013
British Columbia Centre for Excellence in HIV/AIDS June 2008 - May 2011
SRA International May 2010 - April 2011
SRA International July 2009 - May 2010
Skills
Bioinformatics, Genomics, Perl, Computational Biology, R, Cancer Research, BioPerl, Genetics, Data Analysis, Population Genetics, XML, Scientific Writing, Sequence Analysis, Managerial Experience, Data Management, Science Communication, Software Design, Molecular Evolution, Microbiology, Government Contracting, Agile Project Management, Mathematical Modeling, Science, Database Design, Training & Development, Molecular Epidemology, Databases, Management, Open Source Software, JIRA, XSD, Laboratory, Employee Training, Informatics, Federal Agencies, Software Implementation, Neo4j, Evolutionary Biology, Editing, Peer Review, Unix Shell Scripting, Confluence, Wikis, Laboratory Experience, Writing, Writing For Publication, HIV/AIDS
Education
The University of Chicago 1994 — 2000
PhD, Molecular Evolution
University of Vienna 1990 — 1991
Fulbright Scholar, Mathematics
Heriot-Watt University 1988 — 1989
MSc, Mathematics
Washington State University 1983 — 1987
B.S., Mathematics
Chase Miller's BioPerl Project Experience June 2009 - Present
Job Research Director at Center For Genetic Discovery, University of Utah
Industry Research
Experience
Center For Genetic Discovery, University of Utah September 2014 - Present
BioPerl Project June 2009 - Present
Boston College September 2010 - September 2014
Columbia University October 2009 - August 2010
George Washington University May 2008 - September 2009
Google May 2009 - August 2009
Skills
JavaScript, Bioinformatics, Perl, XML, Genomics, Software Development
Education
The George Washington University School of Medicine and Health Sciences 2007 — 2009
Virginia Polytechnic Institute and State University 2001 — 2005
BS, Computer Science
Boston College
Center For Genetic Discovery, University of Utah September 2014 - Present
BioPerl Project June 2009 - Present
Boston College September 2010 - September 2014
Columbia University October 2009 - August 2010
George Washington University May 2008 - September 2009
Google May 2009 - August 2009
Skills
JavaScript, Bioinformatics, Perl, XML, Genomics, Software Development
Education
The George Washington University School of Medicine and Health Sciences 2007 — 2009
Virginia Polytechnic Institute and State University 2001 — 2005
BS, Computer Science
Boston College